Agent Scully wonders why the aliens did not take her baby; Doggett and Reyes continue their investigation into the existence of aliens.
Doggett investigates the death of an EPA official, and asks for Scully's assistance despite her return to teaching at Quantico.
Doggett searches for answers when Scully's baby begins to show signs of being not-altogether human.
Doggett and Reyes investigate a double murder that has ritualistic elements.
Dogget and Reyes investigate a murder which appears to have been perfomed by a satanic cult.
Suspected murderer Lukesh seems to have the ability to affect "paralell universes", causing Lukesh to be framed for possibly shooting Doggett.
Doggett and Reyes investigate an accident that occurs during the filming of a reality TV show, and turn to Scully to resolve the investigation.
Scully lets down her guard when a stranger says he has information about Mulder.
A couple visits Scully claiming their baby has the same abilities as William, but they insist on seeing Mulder; Scully is reluctant to contact him for fear of his safety.
Doggett disappears and awakens in Mexico with complete amnesia; Scully and Reyes struggle to track him down.
Reyes and Doggett investigate a string of murders in which the victims were skinned alive.
Reyes investigates a man who was skinned alive and previously had claimed to have had visions of similar fates; Scully links his death to an earlier case.
Agent Scully and her child are threatened by unknown forces.
Scully gives up on the FBI's investigation and takes it upon herself to track down the kidnappers and rescue her son.
Reyes survives a car accident with a foggy memory, and Dogget tries to defend something she may have witnessed.
An old case of Doggett's is reopened when the muderer, dubbed "The Screwdriver Killer", is released; Scully and Reyes suspect he may not have been responsible in the first place, while they learn he may have supernatural powers.
Reyes and Scully receive clues from a mysterious stranger in their hunt for a serial killer.
Scully, Doggett, and Reyes help Agent Harrison track a man who she believes can dictate the behavior of strange creatures.
The agents enlist the Lone Gunmen to help follow leads regarding the Super Soldiers who threatened Mulder.
Doggett discovers a disfigured man in the office trying to steal documents which pertain to Mulder; Scully fears for her son's safety when he suffers an unknown injection.
An impressive FBI cadet tells Doggett that he has been tracking a murderer who is responsible for the death of Doggett's son; yet Scully and Reyes suspect he may be actually somehow involved in the actual murders.
Dogget and Reyes investigate a murder that takes place outside the actual Brady Bunch house, now inhabited by a nutcase obsessed with the show.
On trial for murder, Mulder acts to save his life, then tries to justify the existence of the X-Files and to prove the existence of extraterrestrials.
On trial for murder, Mulder acts to save his life, then tries to justify the existence of the X-Files and to prove the existence of extraterrestrials.
Series Finale. Mulder surfaces and is found guilty of a murder he did not commit, thus Dogget and Skinner bust him out of jail. On the run with Scully, they encounter Smoking Man who informs them of "the truth" regarding aliens and earth. In the end, Scully consoles Mulder who feels he has failed.
Initially thought to be a separate episode altogether, this episode is part of the previous (Truth I) 2-hour series finale.
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